NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
330.4 |
| Mean read quality |
6.6 |
| Median read length |
316.0 |
| Median read quality |
7.3 |
| Number of reads |
428,438.0 |
| Read length N50 |
332.0 |
| STDEV read length |
99.7 |
| Total bases |
141,569,191.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
416564 (97.2%) 138.5Mb |
| >Q7 |
253848 (59.2%) 82.9Mb |
| >Q10 |
1996 (0.5%) 0.6Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.5 (298) |
| 2 |
11.5 (112) |
| 3 |
11.5 (159) |
| 4 |
11.4 (326) |
| 5 |
11.3 (382) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8479 (4.5) |
| 2 |
6706 (3.8) |
| 3 |
5789 (5.0) |
| 4 |
4757 (3.8) |
| 5 |
4692 (4.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot