NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
278.7 |
| Mean read quality |
5.1 |
| Median read length |
280.0 |
| Median read quality |
6.1 |
| Number of reads |
111,335.0 |
| Read length N50 |
315.0 |
| STDEV read length |
121.7 |
| Total bases |
31,025,642.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
75957 (68.2%) 23.2Mb |
| >Q7 |
39844 (35.8%) 11.6Mb |
| >Q10 |
2878 (2.6%) 0.8Mb |
| >Q12 |
23 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.9 (249) |
| 2 |
12.9 (208) |
| 3 |
12.8 (166) |
| 4 |
12.7 (366) |
| 5 |
12.6 (200) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4762 (3.0) |
| 2 |
2893 (2.7) |
| 3 |
1854 (1.1) |
| 4 |
1424 (4.7) |
| 5 |
1423 (4.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot