NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
364.5 |
| Mean read quality |
6.8 |
| Median read length |
363.0 |
| Median read quality |
7.6 |
| Number of reads |
102,111.0 |
| Read length N50 |
371.0 |
| STDEV read length |
82.2 |
| Total bases |
37,219,758.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
98141 (96.1%) 36.1Mb |
| >Q7 |
66298 (64.9%) 24.2Mb |
| >Q10 |
2855 (2.8%) 1.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.0 (343) |
| 2 |
11.9 (489) |
| 3 |
11.9 (289) |
| 4 |
11.7 (403) |
| 5 |
11.7 (294) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1460 (6.7) |
| 2 |
1459 (6.7) |
| 3 |
1359 (7.5) |
| 4 |
1293 (5.7) |
| 5 |
1279 (6.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot