NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
355.2 |
| Mean read quality |
5.9 |
| Median read length |
336.0 |
| Median read quality |
6.4 |
| Number of reads |
225,702.0 |
| Read length N50 |
358.0 |
| STDEV read length |
120.7 |
| Total bases |
80,170,897.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
214390 (95.0%) 76.8Mb |
| >Q7 |
63203 (28.0%) 21.2Mb |
| >Q10 |
3 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.3 (324) |
| 2 |
10.3 (281) |
| 3 |
10.2 (328) |
| 4 |
10.0 (335) |
| 5 |
9.9 (282) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6914 (3.5) |
| 2 |
5785 (4.2) |
| 3 |
5057 (3.9) |
| 4 |
4566 (4.4) |
| 5 |
4122 (4.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot