NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
286.3 |
| Mean read quality |
8.0 |
| Median read length |
286.0 |
| Median read quality |
8.4 |
| Number of reads |
194,925.0 |
| Read length N50 |
298.0 |
| STDEV read length |
77.8 |
| Total bases |
55,798,059.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
194925 (100.0%) 55.8Mb |
| >Q7 |
194925 (100.0%) 55.8Mb |
| >Q10 |
19153 (9.8%) 5.1Mb |
| >Q12 |
271 (0.1%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (148) |
| 2 |
13.6 (143) |
| 3 |
13.5 (150) |
| 4 |
13.5 (239) |
| 5 |
13.4 (281) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1259 (7.5) |
| 2 |
1248 (7.3) |
| 3 |
1211 (7.4) |
| 4 |
1180 (7.2) |
| 5 |
1163 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot