NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
335.4 |
| Mean read quality |
6.2 |
| Median read length |
320.0 |
| Median read quality |
6.9 |
| Number of reads |
929,015.0 |
| Read length N50 |
341.0 |
| STDEV read length |
113.6 |
| Total bases |
311,576,052.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
890422 (95.8%) 301.4Mb |
| >Q7 |
419245 (45.1%) 138.8Mb |
| >Q10 |
2333 (0.3%) 0.7Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (293) |
| 2 |
11.8 (380) |
| 3 |
11.7 (502) |
| 4 |
11.6 (302) |
| 5 |
11.6 (339) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9468 (4.7) |
| 2 |
8470 (4.6) |
| 3 |
7500 (4.2) |
| 4 |
7145 (4.7) |
| 5 |
6911 (4.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot