NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
277.0 |
| Mean read quality |
5.7 |
| Median read length |
266.0 |
| Median read quality |
7.0 |
| Number of reads |
148,566.0 |
| Read length N50 |
290.0 |
| STDEV read length |
121.3 |
| Total bases |
41,145,736.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
111734 (75.2%) 32.7Mb |
| >Q7 |
73495 (49.5%) 20.8Mb |
| >Q10 |
6453 (4.3%) 1.8Mb |
| >Q12 |
46 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (155) |
| 2 |
13.0 (202) |
| 3 |
12.9 (256) |
| 4 |
12.8 (194) |
| 5 |
12.8 (240) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3254 (4.3) |
| 2 |
2278 (4.6) |
| 3 |
1882 (4.1) |
| 4 |
1796 (4.5) |
| 5 |
1686 (6.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot