NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
392.5 |
| Mean read quality |
5.5 |
| Median read length |
374.0 |
| Median read quality |
6.2 |
| Number of reads |
184,681.0 |
| Read length N50 |
396.0 |
| STDEV read length |
124.4 |
| Total bases |
72,491,695.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
159316 (86.3%) 64.5Mb |
| >Q7 |
42417 (23.0%) 16.2Mb |
| >Q10 |
3 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.4 (274) |
| 2 |
10.2 (442) |
| 3 |
10.1 (316) |
| 4 |
10.0 (372) |
| 5 |
9.9 (376) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3119 (5.9) |
| 2 |
2764 (5.5) |
| 3 |
2131 (5.0) |
| 4 |
2131 (5.2) |
| 5 |
2066 (6.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot