NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
379.7 |
| Mean read quality |
6.9 |
| Median read length |
334.0 |
| Median read quality |
7.6 |
| Number of reads |
79,061.0 |
| Read length N50 |
373.0 |
| STDEV read length |
166.8 |
| Total bases |
30,021,877.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
77819 (98.4%) 29.6Mb |
| >Q7 |
52934 (67.0%) 18.8Mb |
| >Q10 |
1562 (2.0%) 0.5Mb |
| >Q12 |
1 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.2 (102) |
| 2 |
12.0 (393) |
| 3 |
11.9 (228) |
| 4 |
11.8 (780) |
| 5 |
11.7 (689) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2620 (6.0) |
| 2 |
2424 (6.3) |
| 3 |
2280 (6.5) |
| 4 |
2238 (6.5) |
| 5 |
2167 (6.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot