NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
379.4 |
| Mean read quality |
5.8 |
| Median read length |
363.0 |
| Median read quality |
6.4 |
| Number of reads |
158,877.0 |
| Read length N50 |
384.0 |
| STDEV read length |
137.6 |
| Total bases |
60,271,390.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
146285 (92.1%) 56.4Mb |
| >Q7 |
44972 (28.3%) 16.1Mb |
| >Q10 |
9 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.4 (615) |
| 2 |
10.2 (396) |
| 3 |
10.2 (325) |
| 4 |
10.2 (267) |
| 5 |
10.2 (343) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9183 (4.3) |
| 2 |
9010 (4.8) |
| 3 |
8787 (4.0) |
| 4 |
8609 (5.3) |
| 5 |
7909 (5.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot