NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
346.4 |
| Mean read quality |
6.4 |
| Median read length |
350.0 |
| Median read quality |
7.1 |
| Number of reads |
289,343.0 |
| Read length N50 |
367.0 |
| STDEV read length |
95.0 |
| Total bases |
100,222,559.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
279565 (96.6%) 97.7Mb |
| >Q7 |
153691 (53.1%) 53.5Mb |
| >Q10 |
695 (0.2%) 0.2Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.4 (341) |
| 2 |
11.3 (419) |
| 3 |
11.3 (278) |
| 4 |
11.3 (272) |
| 5 |
11.1 (349) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4784 (4.5) |
| 2 |
4193 (4.2) |
| 3 |
4191 (3.2) |
| 4 |
4168 (5.1) |
| 5 |
3269 (4.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot