NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
271.0 |
| Mean read quality |
5.5 |
| Median read length |
268.0 |
| Median read quality |
6.8 |
| Number of reads |
173,669.0 |
| Read length N50 |
291.0 |
| STDEV read length |
121.0 |
| Total bases |
47,071,381.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
127705 (73.5%) 37.4Mb |
| >Q7 |
80282 (46.2%) 22.9Mb |
| >Q10 |
4346 (2.5%) 1.2Mb |
| >Q12 |
14 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (163) |
| 2 |
12.8 (282) |
| 3 |
12.6 (317) |
| 4 |
12.3 (317) |
| 5 |
12.2 (157) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6070 (1.0) |
| 2 |
2066 (5.1) |
| 3 |
1833 (4.7) |
| 4 |
1793 (1.4) |
| 5 |
1791 (4.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot