NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
334.2 |
| Mean read quality |
7.1 |
| Median read length |
320.0 |
| Median read quality |
7.9 |
| Number of reads |
778,454.0 |
| Read length N50 |
333.0 |
| STDEV read length |
93.3 |
| Total bases |
260,172,175.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
767320 (98.6%) 257.4Mb |
| >Q7 |
608619 (78.2%) 203.3Mb |
| >Q10 |
6413 (0.8%) 2.1Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.7 (281) |
| 2 |
11.6 (332) |
| 3 |
11.6 (354) |
| 4 |
11.6 (336) |
| 5 |
11.6 (301) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6547 (3.0) |
| 2 |
6414 (3.9) |
| 3 |
6405 (3.7) |
| 4 |
6042 (3.7) |
| 5 |
5413 (4.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot