NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
307.5 |
| Mean read quality |
6.4 |
| Median read length |
289.0 |
| Median read quality |
7.7 |
| Number of reads |
337,770.0 |
| Read length N50 |
303.0 |
| STDEV read length |
149.7 |
| Total bases |
103,855,792.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
282727 (83.7%) 84.0Mb |
| >Q7 |
211716 (62.7%) 61.4Mb |
| >Q10 |
22011 (6.5%) 6.1Mb |
| >Q12 |
206 (0.1%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.7 (289) |
| 2 |
13.6 (233) |
| 3 |
13.4 (281) |
| 4 |
13.2 (232) |
| 5 |
13.2 (249) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9967 (3.0) |
| 2 |
9818 (3.4) |
| 3 |
9656 (3.8) |
| 4 |
9655 (3.3) |
| 5 |
9345 (3.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot