NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
266.9 |
| Mean read quality |
5.1 |
| Median read length |
234.0 |
| Median read quality |
6.2 |
| Number of reads |
134,037.0 |
| Read length N50 |
268.0 |
| STDEV read length |
213.5 |
| Total bases |
35,775,700.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
88424 (66.0%) 23.2Mb |
| >Q7 |
53145 (39.6%) 13.1Mb |
| >Q10 |
2857 (2.1%) 0.7Mb |
| >Q12 |
21 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (838) |
| 2 |
12.8 (216) |
| 3 |
12.8 (230) |
| 4 |
12.7 (264) |
| 5 |
12.7 (234) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8779 (3.2) |
| 2 |
8743 (4.0) |
| 3 |
8362 (5.3) |
| 4 |
7224 (2.9) |
| 5 |
5372 (4.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot