NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
259.8 |
| Mean read quality |
3.6 |
| Median read length |
296.0 |
| Median read quality |
4.7 |
| Number of reads |
263,345.0 |
| Read length N50 |
348.0 |
| STDEV read length |
168.4 |
| Total bases |
68,422,827.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
118352 (44.9%) 41.5Mb |
| >Q7 |
43109 (16.4%) 14.7Mb |
| >Q10 |
71 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.5 (269) |
| 2 |
11.3 (341) |
| 3 |
10.6 (291) |
| 4 |
10.6 (289) |
| 5 |
10.5 (371) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8089 (2.7) |
| 2 |
7886 (1.5) |
| 3 |
7624 (2.5) |
| 4 |
6776 (2.5) |
| 5 |
6774 (1.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot