NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
382.1 |
| Mean read quality |
7.0 |
| Median read length |
352.0 |
| Median read quality |
7.7 |
| Number of reads |
299,089.0 |
| Read length N50 |
374.0 |
| STDEV read length |
125.6 |
| Total bases |
114,277,795.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
296221 (99.0%) 113.3Mb |
| >Q7 |
208286 (69.6%) 76.2Mb |
| >Q10 |
4445 (1.5%) 1.5Mb |
| >Q12 |
1 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.0 (308) |
| 2 |
12.0 (296) |
| 3 |
11.8 (662) |
| 4 |
11.8 (428) |
| 5 |
11.6 (291) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2661 (5.8) |
| 2 |
2132 (6.3) |
| 3 |
1961 (6.4) |
| 4 |
1833 (5.4) |
| 5 |
1792 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot