NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
372.2 |
| Mean read quality |
7.3 |
| Median read length |
347.0 |
| Median read quality |
8.2 |
| Number of reads |
98,069.0 |
| Read length N50 |
368.0 |
| STDEV read length |
112.6 |
| Total bases |
36,498,457.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
96983 (98.9%) 36.2Mb |
| >Q7 |
75395 (76.9%) 27.2Mb |
| >Q10 |
5643 (5.8%) 1.8Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (338) |
| 2 |
11.8 (301) |
| 3 |
11.8 (327) |
| 4 |
11.8 (389) |
| 5 |
11.7 (293) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2147 (6.7) |
| 2 |
1949 (6.0) |
| 3 |
1766 (7.7) |
| 4 |
1566 (6.2) |
| 5 |
1485 (6.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot