NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
570.1 |
| Mean read quality |
6.5 |
| Median read length |
476.0 |
| Median read quality |
7.2 |
| Number of reads |
684,644.0 |
| Read length N50 |
730.0 |
| STDEV read length |
385.0 |
| Total bases |
390,297,182.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
627468 (91.6%) 385.9Mb |
| >Q7 |
382735 (55.9%) 279.7Mb |
| >Q10 |
77118 (11.3%) 72.5Mb |
| >Q12 |
10413 (1.5%) 10.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.5 (1165) |
| 2 |
14.2 (734) |
| 3 |
14.2 (709) |
| 4 |
14.0 (487) |
| 5 |
14.0 (527) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9215 (4.8) |
| 2 |
8228 (6.8) |
| 3 |
7790 (6.1) |
| 4 |
7055 (5.7) |
| 5 |
6851 (5.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot