NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
295.8 |
| Mean read quality |
6.4 |
| Median read length |
288.0 |
| Median read quality |
7.1 |
| Number of reads |
179,465.0 |
| Read length N50 |
309.0 |
| STDEV read length |
93.4 |
| Total bases |
53,091,265.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
163987 (91.4%) 49.2Mb |
| >Q7 |
95514 (53.2%) 28.7Mb |
| >Q10 |
8482 (4.7%) 2.8Mb |
| >Q12 |
118 (0.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (356) |
| 2 |
12.9 (438) |
| 3 |
12.9 (408) |
| 4 |
12.8 (355) |
| 5 |
12.8 (270) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2583 (4.5) |
| 2 |
1727 (4.6) |
| 3 |
1627 (4.8) |
| 4 |
1581 (5.4) |
| 5 |
1528 (4.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot