NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
291.7 |
| Mean read quality |
7.6 |
| Median read length |
282.0 |
| Median read quality |
7.9 |
| Number of reads |
326,098.0 |
| Read length N50 |
300.0 |
| STDEV read length |
77.2 |
| Total bases |
95,106,626.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
326098 (100.0%) 95.1Mb |
| >Q7 |
326097 (100.0%) 95.1Mb |
| >Q10 |
6327 (1.9%) 1.7Mb |
| >Q12 |
8 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (249) |
| 2 |
12.2 (177) |
| 3 |
12.2 (197) |
| 4 |
12.1 (201) |
| 5 |
12.1 (163) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1465 (7.4) |
| 2 |
1343 (7.9) |
| 3 |
1313 (7.1) |
| 4 |
1262 (7.1) |
| 5 |
1259 (7.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot