NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
373.1 |
| Mean read quality |
6.4 |
| Median read length |
359.0 |
| Median read quality |
7.1 |
| Number of reads |
251,350.0 |
| Read length N50 |
388.0 |
| STDEV read length |
132.7 |
| Total bases |
93,775,673.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
241264 (96.0%) 91.0Mb |
| >Q7 |
136142 (54.2%) 49.5Mb |
| >Q10 |
511 (0.2%) 0.2Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.2 (264) |
| 2 |
11.1 (303) |
| 3 |
11.1 (279) |
| 4 |
11.0 (351) |
| 5 |
11.0 (335) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9663 (3.3) |
| 2 |
8940 (2.9) |
| 3 |
8517 (4.1) |
| 4 |
6535 (4.9) |
| 5 |
6176 (3.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot