NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
339.6 |
| Mean read quality |
6.4 |
| Median read length |
335.0 |
| Median read quality |
7.0 |
| Number of reads |
267,180.0 |
| Read length N50 |
363.0 |
| STDEV read length |
119.4 |
| Total bases |
90,741,401.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
256495 (96.0%) 87.9Mb |
| >Q7 |
137848 (51.6%) 46.4Mb |
| >Q10 |
1330 (0.5%) 0.4Mb |
| >Q12 |
1 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.0 (274) |
| 2 |
11.8 (351) |
| 3 |
11.7 (289) |
| 4 |
11.6 (315) |
| 5 |
11.6 (288) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4423 (4.9) |
| 2 |
2871 (3.6) |
| 3 |
2760 (4.3) |
| 4 |
2657 (4.9) |
| 5 |
2592 (5.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot