NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
366.7 |
| Mean read quality |
6.8 |
| Median read length |
338.0 |
| Median read quality |
7.7 |
| Number of reads |
83,222.0 |
| Read length N50 |
362.0 |
| STDEV read length |
142.8 |
| Total bases |
30,520,567.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
79030 (95.0%) 29.3Mb |
| >Q7 |
54682 (65.7%) 19.0Mb |
| >Q10 |
3565 (4.3%) 1.1Mb |
| >Q12 |
2 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.4 (308) |
| 2 |
12.0 (305) |
| 3 |
11.9 (289) |
| 4 |
11.8 (473) |
| 5 |
11.8 (301) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8419 (3.9) |
| 2 |
5451 (4.4) |
| 3 |
4688 (4.1) |
| 4 |
3774 (4.6) |
| 5 |
2279 (6.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot