NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
320.3 |
| Mean read quality |
6.2 |
| Median read length |
306.0 |
| Median read quality |
6.8 |
| Number of reads |
430,268.0 |
| Read length N50 |
353.0 |
| STDEV read length |
156.1 |
| Total bases |
137,794,834.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
409039 (95.1%) 133.3Mb |
| >Q7 |
187991 (43.7%) 61.3Mb |
| >Q10 |
1020 (0.2%) 0.3Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.5 (402) |
| 2 |
11.5 (408) |
| 3 |
11.5 (255) |
| 4 |
11.4 (364) |
| 5 |
11.3 (221) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4830 (4.6) |
| 2 |
3783 (4.3) |
| 3 |
3038 (5.2) |
| 4 |
2925 (4.7) |
| 5 |
2442 (5.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot