NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
400.9 |
| Mean read quality |
6.6 |
| Median read length |
356.0 |
| Median read quality |
7.5 |
| Number of reads |
123,477.0 |
| Read length N50 |
407.0 |
| STDEV read length |
190.9 |
| Total bases |
49,504,871.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
115811 (93.8%) 48.2Mb |
| >Q7 |
75551 (61.2%) 28.1Mb |
| >Q10 |
4691 (3.8%) 1.6Mb |
| >Q12 |
6 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.6 (466) |
| 2 |
12.4 (363) |
| 3 |
12.4 (561) |
| 4 |
12.4 (391) |
| 5 |
12.1 (333) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2549 (5.8) |
| 2 |
2507 (6.1) |
| 3 |
2446 (5.5) |
| 4 |
2333 (6.1) |
| 5 |
2294 (5.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot