NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
356.5 |
| Mean read quality |
6.6 |
| Median read length |
352.0 |
| Median read quality |
7.4 |
| Number of reads |
117,854.0 |
| Read length N50 |
365.0 |
| STDEV read length |
86.1 |
| Total bases |
42,017,522.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
112586 (95.5%) 40.6Mb |
| >Q7 |
71350 (60.5%) 25.4Mb |
| >Q10 |
934 (0.8%) 0.3Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.6 (288) |
| 2 |
11.5 (334) |
| 3 |
11.4 (412) |
| 4 |
11.2 (471) |
| 5 |
11.2 (295) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8683 (4.5) |
| 2 |
3777 (4.2) |
| 3 |
1978 (4.4) |
| 4 |
1338 (6.1) |
| 5 |
1309 (5.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot