NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
290.3 |
| Mean read quality |
6.7 |
| Median read length |
286.0 |
| Median read quality |
7.6 |
| Number of reads |
113,341.0 |
| Read length N50 |
304.0 |
| STDEV read length |
74.4 |
| Total bases |
32,905,907.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
105921 (93.5%) 31.0Mb |
| >Q7 |
70968 (62.6%) 20.2Mb |
| >Q10 |
6868 (6.1%) 1.9Mb |
| >Q12 |
65 (0.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.8 (187) |
| 2 |
13.3 (339) |
| 3 |
13.2 (291) |
| 4 |
13.1 (205) |
| 5 |
12.9 (205) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1391 (4.8) |
| 2 |
1188 (6.1) |
| 3 |
1146 (5.7) |
| 4 |
1071 (5.4) |
| 5 |
1059 (6.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot