NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
366.0 |
| Mean read quality |
5.9 |
| Median read length |
357.0 |
| Median read quality |
6.8 |
| Number of reads |
112,179.0 |
| Read length N50 |
381.0 |
| STDEV read length |
153.1 |
| Total bases |
41,059,499.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
95918 (85.5%) 37.7Mb |
| >Q7 |
51722 (46.1%) 19.0Mb |
| >Q10 |
4732 (4.2%) 1.7Mb |
| >Q12 |
9 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (421) |
| 2 |
12.5 (204) |
| 3 |
12.3 (324) |
| 4 |
12.2 (292) |
| 5 |
12.1 (355) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7795 (5.1) |
| 2 |
7688 (3.4) |
| 3 |
6683 (4.4) |
| 4 |
6594 (4.6) |
| 5 |
4205 (3.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot