NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
305.7 |
| Mean read quality |
5.6 |
| Median read length |
318.0 |
| Median read quality |
6.9 |
| Number of reads |
128,003.0 |
| Read length N50 |
349.0 |
| STDEV read length |
201.7 |
| Total bases |
39,126,989.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
98031 (76.6%) 34.4Mb |
| >Q7 |
62810 (49.1%) 21.5Mb |
| >Q10 |
3602 (2.8%) 1.2Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.0 (373) |
| 2 |
12.0 (421) |
| 3 |
11.9 (419) |
| 4 |
11.9 (320) |
| 5 |
11.8 (224) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9924 (3.6) |
| 2 |
9606 (3.8) |
| 3 |
8898 (3.4) |
| 4 |
8749 (4.1) |
| 5 |
8741 (4.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot