NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
326.9 |
| Mean read quality |
5.4 |
| Median read length |
341.0 |
| Median read quality |
6.6 |
| Number of reads |
74,155.0 |
| Read length N50 |
401.0 |
| STDEV read length |
182.3 |
| Total bases |
24,242,181.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
54162 (73.0%) 22.1Mb |
| >Q7 |
30375 (41.0%) 12.2Mb |
| >Q10 |
1370 (1.8%) 0.5Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.5 (349) |
| 2 |
11.5 (507) |
| 3 |
11.4 (333) |
| 4 |
11.4 (332) |
| 5 |
11.3 (345) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1959 (5.7) |
| 2 |
1780 (5.7) |
| 3 |
1773 (8.0) |
| 4 |
1758 (5.1) |
| 5 |
1740 (6.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot