NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
265.6 |
| Mean read quality |
4.6 |
| Median read length |
277.0 |
| Median read quality |
5.5 |
| Number of reads |
1,236,613.0 |
| Read length N50 |
306.0 |
| STDEV read length |
105.7 |
| Total bases |
328,437,949.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
716881 (58.0%) 218.1Mb |
| >Q7 |
333967 (27.0%) 100.2Mb |
| >Q10 |
6381 (0.5%) 1.8Mb |
| >Q12 |
22 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.7 (189) |
| 2 |
12.7 (291) |
| 3 |
12.6 (310) |
| 4 |
12.6 (266) |
| 5 |
12.6 (181) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4739 (4.3) |
| 2 |
2422 (1.0) |
| 3 |
2227 (1.0) |
| 4 |
2177 (2.6) |
| 5 |
1749 (1.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot