NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
329.6 |
| Mean read quality |
5.3 |
| Median read length |
331.0 |
| Median read quality |
6.3 |
| Number of reads |
105,014.0 |
| Read length N50 |
372.0 |
| STDEV read length |
206.8 |
| Total bases |
34,615,400.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
75763 (72.1%) 29.0Mb |
| >Q7 |
41179 (39.2%) 14.7Mb |
| >Q10 |
2728 (2.6%) 0.9Mb |
| >Q12 |
2 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.3 (270) |
| 2 |
12.0 (339) |
| 3 |
12.0 (283) |
| 4 |
11.9 (393) |
| 5 |
11.8 (666) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9909 (4.0) |
| 2 |
8916 (3.7) |
| 3 |
8367 (4.5) |
| 4 |
7941 (3.9) |
| 5 |
7649 (4.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot