NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
319.2 |
| Mean read quality |
6.8 |
| Median read length |
313.0 |
| Median read quality |
7.6 |
| Number of reads |
636,429.0 |
| Read length N50 |
326.0 |
| STDEV read length |
94.8 |
| Total bases |
203,173,466.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
616864 (96.9%) 198.2Mb |
| >Q7 |
412709 (64.8%) 131.1Mb |
| >Q10 |
12975 (2.0%) 4.0Mb |
| >Q12 |
3 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.1 (203) |
| 2 |
12.1 (270) |
| 3 |
12.0 (293) |
| 4 |
11.9 (291) |
| 5 |
11.9 (315) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8240 (5.5) |
| 2 |
6332 (4.5) |
| 3 |
6153 (4.4) |
| 4 |
5950 (4.2) |
| 5 |
4410 (4.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot