NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
293.2 |
| Mean read quality |
6.3 |
| Median read length |
285.0 |
| Median read quality |
7.1 |
| Number of reads |
286,390.0 |
| Read length N50 |
305.0 |
| STDEV read length |
100.8 |
| Total bases |
83,980,781.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
257999 (90.1%) 76.7Mb |
| >Q7 |
148385 (51.8%) 43.0Mb |
| >Q10 |
4973 (1.7%) 1.3Mb |
| >Q12 |
23 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (223) |
| 2 |
13.4 (159) |
| 3 |
12.7 (140) |
| 4 |
12.7 (293) |
| 5 |
12.5 (245) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2454 (2.6) |
| 2 |
2370 (6.6) |
| 3 |
2155 (3.4) |
| 4 |
1675 (5.7) |
| 5 |
1665 (5.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot