NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
356.7 |
| Mean read quality |
5.3 |
| Median read length |
342.0 |
| Median read quality |
5.9 |
| Number of reads |
484,384.0 |
| Read length N50 |
363.0 |
| STDEV read length |
108.3 |
| Total bases |
172,761,806.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
414147 (85.5%) 152.5Mb |
| >Q7 |
39936 (8.2%) 14.4Mb |
| >Q10 |
1 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.2 (317) |
| 2 |
9.8 (348) |
| 3 |
9.8 (332) |
| 4 |
9.8 (342) |
| 5 |
9.7 (365) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6359 (2.6) |
| 2 |
5584 (3.2) |
| 3 |
5353 (3.8) |
| 4 |
5222 (4.0) |
| 5 |
4767 (3.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot