NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
292.6 |
| Mean read quality |
6.1 |
| Median read length |
289.0 |
| Median read quality |
6.9 |
| Number of reads |
87,901.0 |
| Read length N50 |
306.0 |
| STDEV read length |
84.2 |
| Total bases |
25,717,058.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
77803 (88.5%) 23.2Mb |
| >Q7 |
41342 (47.0%) 12.0Mb |
| >Q10 |
1708 (1.9%) 0.5Mb |
| >Q12 |
11 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.9 (157) |
| 2 |
12.8 (211) |
| 3 |
12.4 (323) |
| 4 |
12.4 (204) |
| 5 |
12.4 (207) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1927 (3.1) |
| 2 |
1788 (3.2) |
| 3 |
1651 (4.7) |
| 4 |
1564 (4.9) |
| 5 |
1487 (4.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot