NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
356.4 |
| Mean read quality |
6.2 |
| Median read length |
353.0 |
| Median read quality |
6.9 |
| Number of reads |
164,527.0 |
| Read length N50 |
385.0 |
| STDEV read length |
139.5 |
| Total bases |
58,630,172.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
154085 (93.7%) 55.7Mb |
| >Q7 |
77265 (47.0%) 26.6Mb |
| >Q10 |
556 (0.3%) 0.2Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.6 (274) |
| 2 |
11.4 (186) |
| 3 |
11.4 (359) |
| 4 |
11.3 (334) |
| 5 |
11.3 (279) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8110 (3.4) |
| 2 |
7278 (4.1) |
| 3 |
7274 (3.6) |
| 4 |
5585 (3.4) |
| 5 |
4401 (3.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot