NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
285.0 |
| Mean read quality |
5.2 |
| Median read length |
294.0 |
| Median read quality |
6.8 |
| Number of reads |
241,549.0 |
| Read length N50 |
307.0 |
| STDEV read length |
135.6 |
| Total bases |
68,835,448.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
178294 (73.8%) 55.7Mb |
| >Q7 |
110998 (46.0%) 34.5Mb |
| >Q10 |
1519 (0.6%) 0.5Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.6 (308) |
| 2 |
11.6 (298) |
| 3 |
11.4 (319) |
| 4 |
11.4 (339) |
| 5 |
11.4 (446) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9766 (1.6) |
| 2 |
9403 (3.3) |
| 3 |
9316 (2.4) |
| 4 |
9075 (3.5) |
| 5 |
8856 (1.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot