NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
345.0 |
| Mean read quality |
4.4 |
| Median read length |
352.0 |
| Median read quality |
5.3 |
| Number of reads |
302,853.0 |
| Read length N50 |
404.0 |
| STDEV read length |
215.6 |
| Total bases |
104,487,080.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
172411 (56.9%) 71.9Mb |
| >Q7 |
37028 (12.2%) 14.1Mb |
| >Q10 |
11 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.6 (360) |
| 2 |
10.5 (367) |
| 3 |
10.4 (505) |
| 4 |
10.3 (507) |
| 5 |
10.3 (406) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9588 (3.2) |
| 2 |
9501 (2.3) |
| 3 |
9438 (2.6) |
| 4 |
9314 (3.0) |
| 5 |
9297 (3.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot