NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
250.4 |
| Mean read quality |
5.5 |
| Median read length |
253.0 |
| Median read quality |
6.8 |
| Number of reads |
255,451.0 |
| Read length N50 |
264.0 |
| STDEV read length |
79.9 |
| Total bases |
63,961,652.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
190286 (74.5%) 51.0Mb |
| >Q7 |
118145 (46.2%) 31.7Mb |
| >Q10 |
4068 (1.6%) 1.1Mb |
| >Q12 |
17 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.8 (324) |
| 2 |
12.8 (168) |
| 3 |
12.7 (266) |
| 4 |
12.6 (241) |
| 5 |
12.5 (240) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1657 (5.1) |
| 2 |
1441 (3.9) |
| 3 |
1388 (4.2) |
| 4 |
1387 (4.5) |
| 5 |
1343 (5.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot