NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
292.3 |
| Mean read quality |
6.2 |
| Median read length |
282.0 |
| Median read quality |
7.0 |
| Number of reads |
289,154.0 |
| Read length N50 |
299.0 |
| STDEV read length |
94.2 |
| Total bases |
84,519,209.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
261228 (90.3%) 77.1Mb |
| >Q7 |
146995 (50.8%) 42.1Mb |
| >Q10 |
4335 (1.5%) 1.2Mb |
| >Q12 |
19 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.8 (276) |
| 2 |
12.6 (225) |
| 3 |
12.4 (215) |
| 4 |
12.4 (243) |
| 5 |
12.4 (223) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2033 (3.7) |
| 2 |
1861 (5.0) |
| 3 |
1780 (5.4) |
| 4 |
1732 (4.9) |
| 5 |
1602 (4.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot