NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
359.7 |
| Mean read quality |
5.2 |
| Median read length |
355.0 |
| Median read quality |
5.8 |
| Number of reads |
570,151.0 |
| Read length N50 |
374.0 |
| STDEV read length |
123.0 |
| Total bases |
205,107,554.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
461124 (80.9%) 173.4Mb |
| >Q7 |
45702 (8.0%) 17.2Mb |
| >Q10 |
0 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
9.6 (401) |
| 2 |
9.5 (349) |
| 3 |
9.5 (314) |
| 4 |
9.4 (374) |
| 5 |
9.4 (320) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8780 (3.4) |
| 2 |
6801 (3.1) |
| 3 |
6654 (3.1) |
| 4 |
5900 (3.7) |
| 5 |
5682 (2.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot