NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
318.0 |
| Mean read quality |
4.8 |
| Median read length |
343.0 |
| Median read quality |
5.8 |
| Number of reads |
406,572.0 |
| Read length N50 |
368.0 |
| STDEV read length |
166.1 |
| Total bases |
129,304,410.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
274616 (67.5%) 103.3Mb |
| >Q7 |
70483 (17.3%) 26.7Mb |
| >Q10 |
1 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.1 (406) |
| 2 |
9.8 (327) |
| 3 |
9.8 (265) |
| 4 |
9.7 (426) |
| 5 |
9.7 (351) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9947 (3.9) |
| 2 |
9875 (3.0) |
| 3 |
9756 (2.9) |
| 4 |
9692 (2.7) |
| 5 |
9637 (3.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot