NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
350.4 |
| Mean read quality |
5.3 |
| Median read length |
350.0 |
| Median read quality |
5.9 |
| Number of reads |
522,327.0 |
| Read length N50 |
363.0 |
| STDEV read length |
92.7 |
| Total bases |
183,012,624.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
434430 (83.2%) 158.7Mb |
| >Q7 |
60817 (11.6%) 22.5Mb |
| >Q10 |
0 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
9.8 (306) |
| 2 |
9.6 (385) |
| 3 |
9.6 (380) |
| 4 |
9.6 (395) |
| 5 |
9.6 (357) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6000 (3.5) |
| 2 |
5405 (2.6) |
| 3 |
4763 (4.1) |
| 4 |
3591 (3.5) |
| 5 |
3079 (4.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot