NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
284.6 |
| Mean read quality |
4.3 |
| Median read length |
291.0 |
| Median read quality |
5.0 |
| Number of reads |
859,463.0 |
| Read length N50 |
330.0 |
| STDEV read length |
131.5 |
| Total bases |
244,570,212.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
430650 (50.1%) 138.8Mb |
| >Q7 |
178913 (20.8%) 55.1Mb |
| >Q10 |
5824 (0.7%) 1.6Mb |
| >Q12 |
33 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (153) |
| 2 |
13.0 (203) |
| 3 |
12.7 (145) |
| 4 |
12.5 (204) |
| 5 |
12.5 (171) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7314 (3.8) |
| 2 |
4667 (2.9) |
| 3 |
4457 (3.0) |
| 4 |
3557 (2.8) |
| 5 |
2864 (2.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot