NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
335.8 |
| Mean read quality |
4.9 |
| Median read length |
344.0 |
| Median read quality |
5.6 |
| Number of reads |
796,791.0 |
| Read length N50 |
364.0 |
| STDEV read length |
107.1 |
| Total bases |
267,583,174.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
585335 (73.5%) 213.6Mb |
| >Q7 |
42343 (5.3%) 15.9Mb |
| >Q10 |
0 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
9.7 (310) |
| 2 |
9.6 (266) |
| 3 |
9.5 (382) |
| 4 |
9.3 (312) |
| 5 |
9.3 (292) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8329 (3.1) |
| 2 |
6664 (4.2) |
| 3 |
6076 (3.5) |
| 4 |
5817 (2.8) |
| 5 |
4645 (3.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot