NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
289.4 |
| Mean read quality |
6.8 |
| Median read length |
287.0 |
| Median read quality |
7.6 |
| Number of reads |
147,845.0 |
| Read length N50 |
300.0 |
| STDEV read length |
73.6 |
| Total bases |
42,792,418.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
139916 (94.6%) 40.7Mb |
| >Q7 |
96234 (65.1%) 27.6Mb |
| >Q10 |
6911 (4.7%) 1.9Mb |
| >Q12 |
53 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (186) |
| 2 |
12.9 (207) |
| 3 |
12.9 (306) |
| 4 |
12.8 (283) |
| 5 |
12.7 (150) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1619 (4.4) |
| 2 |
1407 (6.4) |
| 3 |
1382 (4.3) |
| 4 |
1322 (4.1) |
| 5 |
1255 (6.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot