NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
277.5 |
| Mean read quality |
5.4 |
| Median read length |
323.0 |
| Median read quality |
6.9 |
| Number of reads |
162,451.0 |
| Read length N50 |
362.0 |
| STDEV read length |
147.8 |
| Total bases |
45,073,944.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
109983 (67.7%) 40.1Mb |
| >Q7 |
79028 (48.6%) 28.7Mb |
| >Q10 |
4004 (2.5%) 1.4Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.7 (491) |
| 2 |
11.7 (394) |
| 3 |
11.6 (343) |
| 4 |
11.6 (291) |
| 5 |
11.6 (364) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3486 (4.1) |
| 2 |
2838 (3.7) |
| 3 |
2491 (4.1) |
| 4 |
1812 (3.7) |
| 5 |
1689 (6.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot