NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
317.0 |
| Mean read quality |
3.9 |
| Median read length |
316.0 |
| Median read quality |
4.8 |
| Number of reads |
1,354,050.0 |
| Read length N50 |
368.0 |
| STDEV read length |
192.1 |
| Total bases |
429,182,743.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
614984 (45.4%) 222.8Mb |
| >Q7 |
197686 (14.6%) 66.0Mb |
| >Q10 |
907 (0.1%) 0.3Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.6 (377) |
| 2 |
11.4 (359) |
| 3 |
11.2 (587) |
| 4 |
11.2 (523) |
| 5 |
11.2 (304) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9712 (2.8) |
| 2 |
9504 (3.4) |
| 3 |
9458 (1.9) |
| 4 |
9450 (2.3) |
| 5 |
9429 (3.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot